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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … of years of evolution, suggesting it plays an important functional role in regulating gene expression. Focusing on … widely across genomes, the team found only a subset were functionally relevant. Those conserved across species tend …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … flower size, and confer stress tolerance traits. Given the importance of polyploidy in plants, researchers have sought … after polyploidization,” said John Vogel, head of the Plant Functional Genomics program at the JGI and a senior author …
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VEGA Symposium
… campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … uncultivated viral diversity, understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward … providing an overview of the latest discoveries related to functional characterization of novel viral diversity, …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science … year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… Over the last year, we’ve been revisiting a number of notable achievements that showcase our collaborations and …   Usually, plants have the upper hand against any kind of biomass breakdown. They’ve spent millions of years … evolved these really tough cell wall materials that keep microbes — and the enzymes that would be produced by …
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Benjamin Cole
… Dr. Cole’s research focus has been on understanding how microbes can colonize plant roots, focusing on genetic … University of California, San Diego (PhD, 2011) Rensselaer Polytechnic … List of pubs available on NCBI … Implementation of the Index of Cell Identity as an R package …
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The Expanding Universe of Methane Metabolisms in Archaea
… gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the composition of the Earth’s atmosphere and regulating the global climate … Simonetta Gribaldo of the Institut Pasteur in France, the importance of methanogenesis and the presence of methanogens …
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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. Originally from northern California and one of the first students to participate in the DOE Joint Genome … communities,” Wang said. Wang, a vocal advocate on the importance of giving scientific presentations, maintains …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… genome data, unlocking new potential for AI-driven studies of energy metabolism. The Science Researchers produced nearly 10,000 new annotations of fungal mitochondrial genomes — the DNA found inside … process in complex cells. Despite their biological importance, these genomes have resisted large-scale …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… a microbial mat. The Science In microbial mats, communities of microorganisms live among viruses that infect them. But … interactions? Do generalist viruses run rampant, capable of infecting different host species? Or, do they tend to … metabolism affects the biogeochemical cycling of carbon, nitrogen, and other elements, better understanding the …
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JGI@25: Strengthening Soybean
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … max ) also has the advantage of reducing the need for nitrogen fertilizer. These impressive environmental and …
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Emiley Eloe-Fadrosh
… Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a … Fellow at the Gordon and Betty Moore Foundation as part of the Marine Microbiology Initiative. She conducted her …
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