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Trent Northen
Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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Honey Bee Gut Microbiota Divvy Up Dinner
… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Panel Discussion: Launching & Sustaining Startups in Synthetic Biology
Creek Featuring a casual, candid, C-level panel discussion with local industry leaders: Arvind Gupta , Managing … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, has discovered … a feedstock for biomass-based biofuel production. As seen with many commonly cultivated commercial crops such as … to address long-standing evolutionary ecological hypotheses about how C4 perennial grasses like switchgrass respond to …
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Cataloging the Microbes that Manage the Health of River Systems
… of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … 3.8 trillion bases or Terabases of sequencing data, along with geochemical and geospatial measurements collected at …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Tracing the Evolution of Shiitake Mushrooms
… sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes … more genetic diversity in wild Lentinula species compared with farmed cultivars, highlighting a potential conservation … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Synthetic Biology Informatics Group
… develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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A Natural Mechanism Can Turbocharge Viral Evolution
… a virus and microbial cell is an embrace. For a virus with a “head-tail” morphology, this means using proteins on … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … research used resources of the National Energy Research Scientific Computing Center (NERSC), a U.S. Department of …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics … to test those hypotheses. From 2011 – 2015, she worked with Sabeeha Merchant at UCLA as a NIH Ruth L. Kirschstein …
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Rex Malmstrom
… of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ … in situ functional activities of specific microbial groups within complex communities.  The Microscale Applications … and enable processing of samples that would not be possible with traditional approaches. … Ph.D. in Marine …
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Partnering with CalTeach – Training the Next Generation STEM Workforce
As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision … to the resources and disciplines advanced by the JGI, we seek to inspire more students to enter the science, … and inclusive pool of talent for career opportunities at JGI and Berkeley Lab. …
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