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… hitchhikers. These organisms are abundant and yet exceptionally small, with mini genomes to match. As a result, they … but these symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these … the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. …

… never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary cousin of the  … a disease ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an … JGI collaborator, are senior authors of the  recent study published in  The Plant Journal.  this study included …

… But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … The Ohio State University and the University of Michigan studying how virus infections cause significant metabolic … cells as virocells, a change in name first described in 2011 which reflects the metabolic changes they’ve undergone. …

… Novel archaeal lineage found in Yellowstone may have been important in early Earth conditions. The … mats at Yellowstone offer researchers an analog for studying early Earth conditions. Additionally, … Through the JGI’s Community Science Program , the team used metagenome assemblies, transcriptomes and single amplified …

… opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. … in industry or academia. It was also a great opportunity to study and learn something totally new during my Ph.D. What …

… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … (Berkeley Lab), to fill in these gaps of knowledge. In a study published November 11, 2022, in Cell Genomics , the … with nearly 5,000 publicly available ones and 1,100 metagenome-assembled genomes (MAGs) reconstructed from …

… cyanobacteria; they began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study how cyanobacteria are living, communally, in microbial …

… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … Finally, using transcriptomics, researchers were able to study which of the trees were turned on or off in response … Laboratory (Berkeley Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic …

… about JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … ) on PhycoCosm tree with several sequenced genomes. 2.  Q: How exactly EcoGroups are built? A: EcoGroups are … there a tool in this platform to search fungal genomes in metagenomes? A: Search in metagenomes is available from …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of … as multiple copies across the chromosomes. In a follow-up study , researchers focused on two types of naturally … JGI Annual Meeting, David Lowry talked about a multi-year study his student conducted involving fungal rust pathogen …

… This single environmental trigger highlights efficiency for users requiring … bacterium's entire metabolism for chemical production, the study provides a blueprint that engineers can use to design … specialty materials and high-value bioproducts. This study offers a template — integrative analysis of multiple …

… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics …