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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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Genes and genome‐resolved metagenomics reveal the microbial functional make up of Amazon peatlands under geochemical gradients
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Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get … genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes these fungi use to break down …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate … root cells, and both organisms rearrange their cells around this structure to facilitate sharing.  Recently, researchers have been able to study both sides of this interaction up close, using RNA …
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User Support Analysis Group
… analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our …
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JGI Workshop at SIMB NP Meeting
Jan. 7: New Capabilities to Study Secondary Metabolism   Although there are still a … and their biosynthetic logics to be understood, accessing these untapped metabolic capabilities is often tedious and resource intensive. This is often due to, for example, tight regulation of …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper … the OGG. For a long time, C-fern has served as a model for studying ferns and for teaching plant biology. It is typical … large genome with numerous chromosomes. For a long time, this immense size and chromosomal hoarding had been thought …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, the cotton fields look like … Institute for Biotechnology. “The goal has been for all this new cotton work, and even the original cotton project … cotton genome ( G. raimondii ) several years ago. Studying the cotton genomes provides breeders with insights …
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2025 NeLLi Symposium
Registration and Agenda Coming Soon!  Hosted by the DOE Joint Genome Institute, the … evolution of cellular complexity and microbial symbiosis.  This is a continuation of the previous NeLLi Symposia. In … Functional Annotation Lead Steven Ahrendt , Biosystems Data Science … Brian Hedlund , University of Nevada, Las Vegas …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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The metagenome of the marine anammox bacterium ‘Candidatus Scalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium
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