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… hours.   FY 2025 DOE Metrics There were 2,627 unique* JGI users in FY2025 , which includes Principal Investigators (PIs), Co-PIs, and collaborators. *Unique users are counted once, even though an individual may have … DOE Quarterly Metrics Q1 – Report on new computational developments for improving microbial, metagenomic, or plant …

… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for … computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as secondary, data-downloading users — have …

… genomics can add significant value to the other commonly used culture-independent sequencing approaches including … the planet’s nutrient cycles and are potentially of use in fields ranging from agriculture to biotechnology and … tools have helped decode the genomes of tens of thousands of previously unknown and uncultivated microbes …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when nutrients are … every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels …

… off early from aerobic fungi, which can breathe oxygen — just like we do. Oxygen is a rich source of energy, and because anaerobic fungi can’t harness it, scientists long held … source of antibiotics. Indeed, these anaerobic fungi may be using these compounds for self-defense. But the compounds …

… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays … scientists have identified at least 15 zealexins, they suspect there are even more to find. Zealexins are produced … a dozen enzymes. But researchers have now revealed that just a handful of enzymes are needed to transform zealexins …

… insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … and short-chain alkane-oxidizing archaea. They used IMG because the database already contains metagenome …

… genomes, is rising. The purpose of this Workshop is to illustrate the expansion of this field and bring it to the … In this workshop, we will present current and ongoing developments at the JGI and KBase toward integrative biology … with the JGI Community Science Program and how you can use the KBase system to accelerate your plant genomics …

… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial hosts that users can select to be engineered. “Piloting access to this …

… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an algorithm that a computer could use to conduct a similar type of search in microbial and …

… all that it has contributed, and what they’re excited about in JGI’s future. Find recordings and recaps of these … to be junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many … of a genomic arms race as they recognized the private industry’s interest in simultaneously sequencing the human …

… discovered more than 6,000 mitochondrial sequences previously unrecognized within existing public databases and … fungi produce and manage energy at the cellular level. Because the annotations are standardized and span the full … and data available through MycoCosm — a platform widely used across the research community — the work lowers …