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Georg Rath
… where he first stumbled from software development into building productive infrastructure in close collaboration … the lead of the infrastructure team and the chair of the Cluster Advisory Group (CAG), he sees his role as using the substrate provided by LBNL, where possible, and …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring … polar bears in winter scenes that came with crayons in various shades of white. To researchers searching for sequences … and Koonin both noted that other research in parallel has reported similar “dramatic expansions” of the global RNA …
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JGI-KBase Panel at SACNAS
… through the Department of Energy-funded National Labs, User Facilities and Programs, and introduce best practices … program managers, and intern alumni will introduce projects designed for students to gain research experience and how students were able to use these experiences to get credit for their scientific …
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA … analysis of microbial, fungal, and plant research projects.  More recently, these long-reads have been applied … requires ~ 1.5-10 ㎍. Low-input protocols are continuously improved, but currently require input in the ~ 30 – …
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Mapping the Earth’s Hidden Fungal Kingdom
… To put this evolutionary timescale in perspective, the genus Aspergillus has been evolving for 82 million years, … and ancient origins, fungi remain largely mysterious. Only about 200,000 fungal species have been named. Among those … snapshots into dynamic stories of evolutionary innovation. Building a Future-Ready Foundation This massive collection …
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MycoCosm Tutorial
… Learn more about MycoCosm, a data portal with over 2,000 fungal genomes …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial … individual genes, whole pathways, genome-editing tools, and reporters.” JGI-developed genetic engineering technique …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical … by Congress in 1980 for Superfund sites which are hazardous waste areas that require cleanup and long-term … are ongoing to complete cleanup.  The process that was used to clean up the toxic chemicals is commonly known as …
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JGIota: A Surprise for Chloroflexota — The First Flagella!
… in hot springs. Hear how their recent work revealed more about the history of the Chloroflexota phylum and a new way …
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