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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Arianna Krinos
Arianna is an affiliate research who explores the effect of aquatic protistan taxonomy and genetic diversity on physiology and ecosystem functioning through a combination of transcriptomic, metatranscriptomic, …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a … single cell – a symbiont of the green sharpshooter. In 2012, single cells isolated from the microbes found in the oil …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: Accessing … really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … back in 2016.” Alper’s first approved JGI proposal came through the Functional Genomics (formerly DNA Synthesis) …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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Better Genome Editing for Bioenergy
A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists … sgRNAs for their final set. Tool in hand, the team was ready to test what genes were essential to  Y. lipolytica . …
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Digging into Microbial Ecosystems Deep Underground
… “Microbes underpin so much of what we see on earth in terms of nutrient cycles and … Microbiome . The work builds off a proposal approved through a collaborative science initiative called Facilities …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission … in Biochemistry, University of Washington … Shen et al., Mitochondrial ATP generation is more proteome efficient than …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and … models, Miscanthus has a large and complex genome whose evolutionary history and perennial lifecycle makes it … and Environmental Research under Award Number DE-SC0018420. The work conducted by the U.S. Department of Energy …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these … the most biomass to date of any such strain, identified through a screening and characterization pipeline. The …
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Complete genome sequence of Coriobacterium glomerans type strain (PW2T) from the midgut of Pyrrhocoris apterus L. (red soldier bug)
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Neha Varghese
Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and … She also provides support for user science and projects through implementation of advanced analysis pipelines and …
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