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2022 Progress Report
… the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … Science user facility at Lawrence Berkeley National Laboratory (Berkeley Lab), is to become the leading integrative genome science user …
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Webinar: MycoCosm Tutorial
… fungal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Do you accept oomycetes to be proposed for genome sequencing, or only “true fungi”? … and the microbial world but we also annotated several Phytophthora genomes; this depends on the scientific questions …
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Webinar: PhycoCosm Tutorial
… algal genomes, omics data and comparative analysis tools. Questions and Answers 1.  Q(uestion): Why would your … A(nswer): If you find that our trees are incorrect or need to be changed, please contact us and we’ll work work it out … work in progress as new genomes are being added. We do plan to publish the tree or their parts and data it is based on …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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A More Intuitive Phytozome Interface
… plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  version 13 will become the current, and only, version of Phytozome accessible as an interactive website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which …
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A User-Centered Approach to Accessing JGI Data
… year, it was only accessible through the plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a common set … shift in data access. Users were previously limited to accessing data sets within groups, such as plants (via …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and organisms than … — that’s three-quadrillion base pairs of DNA sequence! To meet this “ data tsunami ,” as Kathy Yelick of the … Computing Sciences Area at Lawrence Berkeley National Laboratory (Berkeley Lab) describes it, JGI researchers have also …
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Annual Meeting 2027
… details become available. Sign up for our newsletter to receive updates.    …
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Natural Prodcast Episode 20: Brian Bachmann
… DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this introduction. First and foremost, … Chemistry Department, where he is the PI of the Laboratory for Biosynthetic Studies. Brian and I are old friends …
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Host population diversity as a driver of viral infection cycle in wild populations of green sulfur bacteria with long standing virus-host interactions
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H2-saturation of high affinity H2-oxidizing bacteria alters the ecological niche of soil microorganisms unevenly among taxonomic groups
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Synergistic interactions between anammox and dissimilatory nitrate reducing bacteria sustains reactor performance across variable nitrogen loading ratios
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