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Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's … been sampling the microbes of that lake for over 20 years, to understand how the freshwater ecosystem works.  So a few … to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes are the …

… group focuses on developing new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up … MetaBAT , an automatic metagenome binning software … Education … Selected Publications … Software …

High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …

… researchers described how the viruses repeatedly attempted to infect and destroy the host archaea – and how the  … The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… multi-omics datasets, equipped with interactive web-based tools for comparative genomics and community annotation. …

The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to … by most living creatures for energy, growth and reproduction—most organisms produce a set of "secondary … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …

… our warming world, we’ll need corn, sorghum and other crops to grow well in worse conditions: with more heat, less water … plant biologists James Schable, Guangchao Sun and Vladimir Torrres have looked into traits that could transfer from grasses into other …

… uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … The microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated …

… of infecting different host species? Or, do they tend to specialize, infecting just a single host? Another wrinkle … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … they’d likely have a hard time finding more. … The work conducted by the U.S. Department of Energy Joint Genome …

… of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the areas of metagenomics, …

Neha’s key role is to design, benchmark, and apply bioinformatics software to enable analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user …

TBK Reddy gives an overview of the JGI's Genomes OnLine Database and why curated metadata …