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Open Frameworks Training the Next Generation of Scientists
… students developing skills in fungal biology and genomics. Fungi can be better understood through reference genomes, … no reference genomes. It’s a key problem to solve because fungi are very diverse organisms with potential … and data analysis. Starting with isolating and identifying fungi in the environment, students can prepare samples for …
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genome sequences could help researchers better understand related genes in more complex plants that could be applied … want to take a further look into identifying genes related to biotic stresses to better understand the genetic …
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Nick Everson
… of the JGI Director in day-to-day management and planning related to the JGI’s infrastructure and business functions. …
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Novel heavy metal resistance gene clusters are present in the genome of Cupriavidus neocaledonicus STM 6070, a new species of Mimosa pudica microsymbiont isolated from heavy-metal-rich mining site soil
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A Plant Root Atlas for Tracking Developmental Trajectories
… a foundation for still larger efforts in diverse plant species beyond models,” he said. Cole annotated cell types … for this purpose is “particularly applicable for non-model species for which fewer ‘marker’ genes are known that are … committed to advancing genomics in support of DOE missions related to clean energy generation and environmental …
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The Expanding Universe of Methane Metabolisms in Archaea
… undescribed lineages, and the other five only distantly related to known methanogens. With the help of this … ( Ca.  Methanodesulfokores washburnensis) is more distantly related, containing genes for both methane and sulfur … committed to advancing genomics in support of DOE missions related to clean energy generation and environmental …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… use for stream health, they look at how many invertebrate species are there.  ALISON:  Those invertebrate species include mayflies and the caddisflies, which are of … to fly-fishers. ED: And he found that the number of species were the same, but what they’re eating was …
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Silver age of GOLD introduces new features
… reliable manner. The JGI team managing GOLD already works closely with two other DOE-funded projects — the National …
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Exploring Polymorphisms Created by Transposable Elements
… elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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A User-Centered Approach to Accessing JGI Data
… data sets within groups, such as plants (via Phytozome) or fungi ( MycoCosm ). “We have made a concerted effort to … committed to advancing genomics in support of DOE missions related to clean energy generation and environmental …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… to something that represents all of the genes within a species. A pangenome, then, consists of those sequences shared among all individuals in a given species as well as what’s called the “dispensable” genome — those little individual variabilities within a species that hold clues for maximizing the genetic code’s …
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