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Refining the Process of Identifying Algae Biotechnology Candidates
… -- copy to summary above^ as well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Understanding Wildfire Recovery, Starting in Soil
The Science After a wildfire burns, recovery begins at the forest floor. Within the soil, a microbiome of bacteria, … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … for User Science (FICUS) initiative and used resources at the Environmental Molecular Sciences Laboratory …
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Ben Bowen
… projects, Dr. Bowen’s work focuses on developing high-performance computing workflows and integrating mathematics and chemistry for advanced analysis, modeling, and data integration. Dr. … with the unknown: metabolomics and metabolite atlases. Journal of the American Society for Mass Spectrometry, 21, …
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Daniel Udwary
Dr. Udwary serves as a computational biologist for JGI’s Secondary Metabolites group. His research interests lie in use and development of bioinformatics tools for elucidation of biosynthetic gene …
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Supercharging SIP in the Fungal Hyphosphere
… successfully automated aspects of a commonly-used process for studying microbial communities, with results published … with potential applications in industry and biotechnology for the production of  clean energy . Summary Arbuscular … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … with long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses …
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Katherine Louie
Dr. Louie joined the JGI in 2014 to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … the trees in his backyard. Originally from northern California and one of the first students to participate in the … sitting on the [Walnut Creek] campus … It was a resource-rich environment,” Lawrence said. While interning, he …
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How to Target a Microbial Needle within a Community Haystack
A workflow for capturing the genetic make-up of specific uncultivated … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … DNA could be sequenced. Their protocol,  detailed in the journal  Microbiome , combines multiple techniques and was …
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Extracting the Secrets of Secondary Metabolites
… secondary metabolites, those molecules not essential for growth yet essential for survival, may now be easier to characterize following a … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and … they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an experienced career …
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Digging into Microbial Ecosystems Deep Underground
… about the microbial communities deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … recently published paper with first author Amundson in the journal Microbiome . The work builds off a proposal approved …
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