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Supporting Global Research into Actinomycetes
… ActinoBase offers a public portal of insight into special groups of actinobacteria … biocontrol agents and to promote plant growth. It is the largest genus within Actinobacteria and therefore a … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … data from the precious Olpidium zoospores remained largely untouched until seven years later. In 2018, as …
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Toward More Efficient Artificial Photosynthesis
… (MPI) for Terrestrial Microbiology and the University of Bordeaux have developed a platform that mimics chloroplast function within a cell-sized system. The Impact … them to test composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director …
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Data Ecosystem
… The JGI is leveraging its current partnerships to offer new capabilities and resources to users through a BER … is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, … access to diverse datasets that deepen our understanding of how organisms interact with each other and with their …
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Better Genome Editing for Bioenergy
… A team has optimized a crucial part of CRISPR-Cas9 technology to enable improvements in … genome with CRISPR-Cas9 in order to interrogate each one’s function. However, the team first needed to fix a defect in … Without a good sgRNA, Cas9 is ineffective and leaves the target gene intact: a false negative if the gene is actually …
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VEGA Symposium
… Bird rates available now General & Berkeley Lab Attendee – $250 Students & Postdocs – $200 Regular Rates (begin … campus. Organized every two years since 2018, the goal of this symposium is to bring together a “Viral Ecogenomics” … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity toward …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to … specific to the environment.  Machine learning was also a large part of the creation of the tool. The team used two … The work conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 …
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JGI Announces 2023 Community Science Program Awardees
… Congratulations to the proposers of the 19 proposals selected for the 2023 Community Science … their success. “ The CSP Annual Call is focused on large-scale genomic science projects relevant to the DOE’s … year’s annual CSP call had five areas of emphasis: genes to function, plant and algal functional genomics, …
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Silver age of GOLD introduces new features
… follows community standards freely available, and enabling large-scale comparative genomics analysis initiatives. GOLD … sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist … understand the role of viruses in natural ecosystems, and functionally explore viral genetic diversity.  In 2021, he … uses a combination of experimental approaches and large-scale data analysis to better characterize how viruses …
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Honey Bee Gut Microbiota Divvy Up Dinner
… Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Gilliamella,  which mostly resides in the bee’s ileum, a structure analogous to the human small intestine; and  … rectum, downstream of the ileum and similar to the human large intestine. Both bacterial clades can metabolize …
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