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Waiting to Respire
Genomes from uncultivated bacteria offers clues to ancestral bacteria’s energy sources. More than two billion … ability to produce their own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of …
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Computationally Classifying Fungal Lifestyles
… genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that “taught” a computer how to classify 101 … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data …
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Gene Expression: From On-Off Switch to Dial
Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have developed a … to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of gene … on, scientists can determine the level of gene expression by the gradations. The Impact Metabolic engineering could …
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Tracking the Origins of Methane-Producing Microbes
Mini-Metagenomics Approach Helps Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over half the total global … The archaeal genome was detected in samples collected by Stephen Quake’s team at Yellowstone National Park’s …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
JGI-led team significantly expands the global diversity of large and giant … recent study  published in the journal  Nature , a team led by researchers at the U.S. Department of Energy (DOE) Joint …
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Alabama A&M Interns Access An Abundance of Knowledge
In 2024, the DOE Joint Genome Institute and Alabama A&M University piloted an internship program to … to the JGI for research training experience. Enabled by the DOE RENEW initiative, undergraduate student Ti’Yanna … mentors Yi Zhai and John Vogel on researching the effects of Brachypodium distachyon plant root exudates on the plant …
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Tanja Woyke Elected to American Academy of Microbiology
Congratulations to the JGI’s Tanja Woyke , who has been elected to the American Academy of Microbiology (AAM) ! She is among the 68 new Fellows in … am thrilled to see Dr. Woyke’s important work acknowledged by this most prestigious honor,” said Axel Visel , JGI …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… with C. richardii The Science Fern genomes are huge, and incredibly complex — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … next-generation plant biology. … The work conducted by the US Department of Energy Joint Genome Institute is …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. … for User Science (FICUS) program, two Department of Energy (DOE) Office of Science national user … mutant library in Chlamy, as the alga is colloquially known by researchers. A missing gene from this mutant library …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
Accepted proposals emphasize JGI interests in algae and secondary metabolites. A total of 27 proposals have been  approved through the annual  … Brassicales Genome Initiative. Brassicales is represented by more than 4,700 species, and the proposal focuses on …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common images in many regions … and floods. The planet’s resources are being stretched by a growing human population and increasing demand for …
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Uncovering Novel Genomes from Earth’s Microbiomes
Large-scale comparative analysis leads to identification of biosynthetic gene … expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, 2020 in  …
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