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Comparative and transcriptional analysis of the predicted secretome in the lignocellulose‐degrading basidiomycete fungus Pleurotus ostreatus
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Machine learning-based prediction of activity and substrate specificity for OleA enzymes in the thiolase superfamily
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Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics.
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Translating macroecological models to predict microbial establishment probability in an agricultural inoculant introduction
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… foundational science, creating opportunities for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … in areas such as developing pathogen-agnostic detection and prediction strategies for types of as-yet unknown pathogens. …
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Silver age of GOLD introduces new features
… sequencing projects carried out at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … by external users. The Impact One of the significant challenges in maximizing genomic data usage is having the … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the … States. They also provided multiple access points to the information. The team harnessed a community-science program to …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion …
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IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … tools and other standardized data resources that the global research community can access and use to manage the … have been filtered out as noise using more traditional methods. Thus far 25 terabases of metagenome data have been …
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From Competition to Cooperation
… Tracking evolution of symbiotic lifestyles across multiple fungal lineages. The … relationships, and how the mutualistic associations allow host plants, such as candidate  bioenergy feedstock crops, … why, researchers analyzed 135 fungal genomes representing major fungal families, including those for which there were …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … great science that will help solve energy and environmental challenges. In 2009, researchers at the JGI and the Bigelow … than 200 microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. …
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