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Aerobic bacteria and archaea tend to have larger and more versatile genomes
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Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae
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BLINK enables ultrafast tandem mass spectrometry cosine similarity scoring
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Wringing everything out with bioprospecting
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … What started with 2 interns in the summer of 2014 has grown to a total of 75 with the inclusion of the 2023 cohort. Each … ways. “At Berkeley Lab, we have an established set of core stewardship values which are integral to what I do on a …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science … Canal System,” focuses on anthropogenic impacts on wetland microbiome composition and metabolism, work on which she is …
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Mining Metagenomes for Cas Proteins
… Institute.  The Science Researchers report the discovery of miniature Clustered Regularly Interspaced Short … Microbial Genomes and Microbiomes (IMG/M) suite of tools managed by the U.S. Department of Energy (DOE) Joint … range of applications for CRISPR-Cas systems. It also underscores the untapped potential waiting to be unearthed in …
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Unusual biology across a group comprising more than 15% of domain Bacteria
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… In  Nature Communications , researchers describe a strategy to recover high value products from human waste. They   genetically modified yeast to efficiently convert elements present in urine to create … hydroxyapatite, a high-value biomaterial with a wide range of industrial applications. The team was led by researchers …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to their User Executive Committee (UEC) – Jack Gilbert, … serving on the UEC – go here to view the full roster of members. Each of the researchers had their own reasons … efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of Research at …
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An Automated Tool for Assessing Virus Data Quality
… (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a … have now developed CheckV (pronounced “Check-Vee”) to help researchers assess and improve the quality of … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI researchers Lee … . The following guest piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early … User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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