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Metabolic Network Analysis and Metatranscriptomics Reveal Auxotrophies and Nutrient Sources of the Cosmopolitan Freshwater Microbial Lineage acI
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Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
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Pathway-Centric Analysis of Microbial Metabolic Potential and Expression Along Nutrient and Energy Gradients in the Western Atlantic Ocean
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) and a chemical … code for CRISPR systems, which help bacteria resist foreign genetic elements by incorporating short sequences from …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes … that had in their genomes a surprising tool: a “diversity generating retroelement,” or DGR. The DGR could mutate the … Moreover, the discovery of more than 30,000 DGRs in this analysis, a 20-fold increase over what was previously known, …
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Genes and genome‐resolved metagenomics reveal the microbial functional make up of Amazon peatlands under geochemical gradients
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had … Genome Engineering Enables Rapid Activation of Biosynthetic Gene Clusters. Nat Microbiol. 4(12):2498-2510. doi: … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
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Identification and distribution of the NBS-LRR gene family in the Cassava genome
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part … Microbiology, Université Blaise Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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JGI Scientists Pen Genome Watch Articles
Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — … and metagenome , rather than just by 16S ribosomal RNA gene censuses.  Emiley Eloe-Fadrosh ,  Metagenome Program … integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to …
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Genome Analysis of a Verrucomicrobial Endosymbiont With a Tiny Genome Discovered in an Antarctic Lake
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