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Pleiotropic and Epistatic Network-Based Discovery: Integrated Networks for Target Gene Discovery
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Integrating biogeochemistry with multiomic sequence information in a model oxygen minimum zone
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An integrated metagenomic, metabolomic and transcriptomic survey of Populus across genotypes and environments
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The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history
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CRAGE-mediated insertion of fluorescent chromosomal markers for accurate and scalable measurement of co-culture dynamics in Escherichia coli
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … a gene sequence-based predictor of gene expression levels using machine learning tools. “This was very exciting to see …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are … attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR systems, which help … populations respond to virus infections, researchers are using Altiarchaea as a model system to study virus-host …
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DAS Tool for Genome Reconstruction from Metagenomes
… developed and improved upon a tool that combines existing DNA sequence binning algorithms, allowing them to … individual genomes, particularly from incredibly complex soil microbial communities, is crucial to … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this …
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The genome of the polyextremophilic yeast, Naganishia friedmannii, reveals adaptations involved in stress response pathways, carbohydrate metabolism expansion, and a limited DNA repair repertoire
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Quantitative DNA Stable Isotope Probing Identifies Active Microorganisms Assimilating Volatile Fatty Acids in Full-Scale Enhanced Biological Phosphorus Removal Processes
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The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. – Acephala appalanata species complex
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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