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Adam Reisselman on being a 2016 DOE Computational Science Graduate Fellow
Department of Energy's Computational Science Graduate Fellowship (DOE CSGF) program was developed to meet the Nation's … science and technology professionals with advanced computer skills. During the summer of 2016,  DOE CGSF recipient Adam Riesselman of Harvard University worked with DOE JGI's Sam Deutsch. Learn more about the DOE Computational …
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Gene Expression: From On-Off Switch to Dial
… library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, which leverages an … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231. …
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Help from Citrus’ Bitter, Hardier Cousin
You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus trifoliata , it’s an evolutionary … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … fruit, yet sweet are its genetic secrets. This work builds upon JGI-supported research led by Gmitter and JGI’s Daniel …
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Green Algae Reveal One mRNA Encodes Many Proteins
Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … al . In both studies, however, Olpidium was unexpectedly grouped with non-flagellated terrestrial fungi, but not with …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of microorganisms live among viruses that infect them. But what trends govern those virus-host interactions? Do … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231. JRS is …
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Trent Northen
Berkeley Lab in 2008, Dr. Northen has had leadership roles within large DOE-funded research programs using mass … the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … was over 95% successful at classifying the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… mix-and-match characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … that we studied are involved in transfer of the amine group, or the N group, to a variety of different molecules. So …
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JGI-KBase Panel at SACNAS
… 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? This … credit for any scientific contribution they make, whether as part of a course or internship, and before ever publishing a research article. …
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Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica
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Cataloging the Microbes that Manage the Health of River Systems
… systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University … The team also provided several access points for these datasets. As part of a larger microbiome data integration hub, … could work across platforms. … This work was partially supported by awards from US Department of Energy (DOE) Office …
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