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A Guide to Gene‐Centric Analysis Using TreeSAPP
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Refining the Process of Identifying Algae Biotechnology Candidates
… place these algae in a container with access to sunlight, water and carbon dioxide so they can grow, and then harvest … effort published in Communications Biology , a team involving researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Collaboration to Improve Plant Genome Annotations Across Species
… specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … We did so by analyzing this huge sample set specifically using results from tissue and condition-specific expression …
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Nikos Kyrpides
… the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and … on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling … Reveal Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson …
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The Case for Conservation
… help improve crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . … question. In a recent Scientific Advances article , a team led by McDaniel and his former graduate student Sarah … to evolve so rapidly in gene content and structure. He and JGI Plant Program head Jeremy Schmutz already see how …
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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Annotation of metagenome short reads using proxygenes
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Transcriptional control of Clostridium autoethanogenum using CRISPRi
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Nandita Nath
Nandita is involved in developing new methods to improve genome recovery from single cells and to build sequencing libraries from minimal DNA input without amplification. …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was preceded by short final presentations attended by …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to J.F.B.). The work ( proposal doi: 10.46936/10.25585/60000800 ) conducted by the U.S. Department of Energy …
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Triggering Morel Fruiting
A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on …
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