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JGI announces second round of 2023 New Investigator awardees
… right: [above] Emma Bell, Mallory Choudoir, Sneha Couvillion, Tobin Hammer, Christina Hazard, Rachel Mackelprang, … Brook Moyers, Mei, Ran,; [below] Benjamin Peterson, Dacheng Ren, Allison Rober, Neal Scott, Chikae Tatsumi, … That’s why twice each year we look for novel research projects — aligned with DOE missions and from PIs who have …
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An Automated Tool for Assessing Virus Data Quality
… Through advances in sequencing technologies and computational approaches, more and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality and … microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
…   On November 3, 2021, the JGI and the Workforce Development & … for the summer term (May through August) and selected projects will receive stipend and travel expenses, both for … and Elisha Wood-Charlson for the DOE Systems Biology Knowledgebase (KBase) Ian Blaby for the JGI DNA Synthesis Platform …
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A Sorghum Pangenome Opens More Doors to Discovery
… holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to bolstering sorghum fields, understanding this plant … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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Webinar: SIP technologies at EMSL and JGI
… The Environmental Molecular Sciences Laboratory (EMSL) and the Joint … a variety of tools that leverage stable isotopes to measure carbon and nutrient flux, and identify microbes assimilating … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … (Berkeley Lab), and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial … hope JGI and other institutions continue to do this kind of projects.” The work also used resources of the  National …
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How Maize Makes An Antibiotic Cocktail
… a family of compounds that protects it against infections — using surprisingly few enzymes. The Science Maize ( … protect maize by fending off fungal and microbial infections. Scientists had assumed that maize synthesizes these … including bioenergy. All plants make terpenoids, which carry out a diverse array of functions, including acting as …
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DAP-seq Drives Robust Mapping of Gene Regulation
… assays yield an unprecedented view of plant evolution and adaptation.    Understanding how genes are regulated … were designed for samples from humans or mice,” said Sharon Greenblum, a co-first author on the paper and computational … robustness will enable researchers to propose multi-genome projects, opening new avenues for comparative regulatory …
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Tanja Woyke
… After studying the mechanism of action of antifungal natural products and their derivatives … in 2004. The main object of her research was the symbiont community of a gutless oligochaete for which she deciphered function and host-symbiont interplay using metagenomics. Taking on …
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How to Target a Microbial Needle within a Community Haystack
… make-up of specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at … targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and associate … their sequences with their roles within their environments. Summary The traditional shotgun metagenomics …
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JGI Early Career Researchers Featured in mSystems Special Issue
… issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation could look like. … and Roux are part of the first cohort to receive Early Career Development awards as part of the Laboratory-Directed …
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JGI Launches Latest Strategic Plan
… Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion nucleotide bases of DNA …
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