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Axel Visel
… a regulator of lipid metabolism in microalgae .  Nature Plants 1: 15107 Lupiáñez DG, Kraft K, Heinrich V, Krawitz P, … De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana. BMC Genomics  14, …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Riverside and Igor Grigoriev from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … to terrestrial habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and …
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Calculating the Costs of Multiple Switchgrass Gene Copies
Scientists have discovered that the candidate bioenergy feedstock switchgrass has adapted to expand its … could be generating these observed patterns. As many other plant species have natural cytotype variation, we also hoped … hundreds of naturally-occurring genotypes (in this case, a plant’s complete genetic makeup) and 10 common gardens. We …
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JGI Accepts 17 Proposals for Community Science Program
Science Program (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … group of fast-growing tree species that are widely grown as feedstocks for lignocellulosic and other biorefinery …
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A Natural Mechanism Can Turbocharge Viral Evolution
… questions, a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … could then use these proteins to recognize individual pathogens and pull them out, like fish on a fishing line, … tools. … The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely … work was our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … of Wisconsin-Madison as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of …
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An Integrated Dataset to Understand Ecosystem Interaction
… to changes in the environment. The Impact Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. … researchers came from two environments: natural forests and plantations managed through human intervention. By … Lab). All of this information — 318 metagenomes, 98 plant transcriptomes and 314 metabolomic profiles — combined …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
HudsonAlpha Institute for Biotechnology. Phytozome is the Plant Comparative Genomics portal of the Department of Energy Joint Genome Institute, and facilitates accurate and …
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JGI on the 2020 Highly Cited Researchers List
… consortium, they  conducted a large-scale comparison of 135 fungal sequenced genomes to understand how plants and fungi developed symbiotic relationships, and how … and benefit from breeding programs of related candidate bioenergy feedstock crops such as sugarcane and sorghum.     … …
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Fishing for Novel Cellulose Degraders
… by researchers led by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … samples. … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User … program (LDRD) entitled ‘Tackling microbial-mediated plant carbon decomposition using “function-driven” genomics’. …
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Crysten Blaby-Haas
… to include in vitro protein-based techniques, algae, and plants, while focusing on understanding the evolution and … (2015) where she co-founded and led the Quantitative Plant Science Initiative (2017-2022), a BER Science Focus … Stübe R, Argüello JM and Merchant SS. (2014) Evolution of a plant- specific copper chaperone family for chloroplast …
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A Step Toward Controlling Soybean Rust
… soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in 2010.       … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User … genomics in support of DOE missions related to clean energy generation and environmental characterization and …
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