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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous … viruses (from environmental metagenome samples) from IMG/VR , a database that is part of the Integrated Microbial …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… current faculty. Applying faculty members may invite up to two student participants from the faculty member’s home … were: Simon Roux and Matthew Kellom for the JGI Metagenome Program Ellen Dow and Elisha Wood-Charlson for the …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in … Gabino Sanchez-Perez, Ben Scheres, and Viola Willemsen. "Two deeply conserved non-coding sequences control …
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Enlarging Windows into Understanding Gene Functions
… four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … led by co-first authors Leo Baumgart and Juna Lee developed two approaches that build upon the DAP-seq technology … to control new functions,” O’Malley said. “Combining the two approaches of Biotin DAP-seq and multiDAP allows for …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… Research Scientific Computing Center (NERSC), the DOE Joint Genome Institute (JGI), and the Energy Sciences Network (ESnet) have been recognized for outstanding … award recognized the release of MetaHipMer, an end-to-end genome assembler that supports “an unprecedented assembly of …
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JGI Announces 2023 Community Science Program Awardees
… Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI@25: Solving the Mystery of the Missing Oil
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… to enable large-scale analysis. The story of a massive metagenome assembly for a time-series experiment from the … Lake Mendota is told as part of a three-part series of our  Genome Insider podcast .    ( Subscribe to Genome Insider on  Apple Podcasts ,  Spotify or wherever you …
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JGI Accepts 17 Proposals for Community Science Program
… (CSP) call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … international collaboration that produced the reference genome sequence for Eucalyptus grandis. Accessing recently …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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JGI announces 2024 New Investigator portfolio
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… coherent pieces called contigs — into genes and even into genomes — from these environmental samples,” said Matthias … how JGI data supports higher education in this JGIota , a Genome Insider podcast minisode.)  “The ultimate target has …
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