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Natural Prodcast Episode 4: Nancy Keller
… the primer podcasts ( part 1 here , part 2 here , and part 3 here ), which you should be able to find earlier in the … challenges were associated with getting good transformation systems going. That has a lot to do with, well, the fact … genome, I guess, and the way DNA is activated. The promoter systems are different. We don’t have operons. It’s just …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Digging into Microbial Ecosystems Deep Underground
… cycles…. Viruses play a pretty important role in the cycling of nutrients in these systems.” -Mike Wilkins, Colorado State University GI users … at: the role viral infection may play in other natural ecosystems. The video complements a recently published paper …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… through genomic discovery across diverse organisms and ecosystems. Scientists are engineering next-generation feedstocks through CRISPR-edited poplars with optimized lignin, engineering heat-resilient algae for industrial …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… microorganisms therefore play a critical role in the global carbon cycle, and are of significant interest for their … global carbon cycle and greenhouse gas dynamics, and the engineering of new, optimized methane-making microbes. In … research of these newly found methanogens  in diverse ecosystems with  support from a DOE Established Program to …
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Programs & Platform Leads
… of complex biological, earth, and environmental systems for energy and infrastructure security. In …
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Hydrothermal Vents and International Science: A Postdoc’s Visit to the JGI
… fellow at the Biological and Environmental Sciences and Engineering Division at King Abdullah University of Science …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… company LanzaTech to develop a “cell-free” gene expression system. Developed through the JGI DNA synthesis Community Science Program (CSP) Functional Genomics, the system allows scientists to test enzymatic pathways, which … Clostridium autoethanogenum. The microbe can utilize carbon oxides, including the greenhouse gas carbon dioxide, …
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A Grass Model to Help Improve Giant Miscanthus
… without requiring replanting. Miscanthus is especially efficient at this process thanks to a specialized kind of … to and from the rhizome and contribute to the grass’ efficient perennial life cycle. For example, in the fall the … U.S. Department of Energy under Contract No. DE-AC02-05CH11231. The collection of the M. sinensis and M. sacchariflorus …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an … researchers recently compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. … Berkeley National Laboratory (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an …
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An Automated Tool for Assessing Virus Data Quality
… genomes . The Impact The microbes that play key roles in cycling nutrients such as carbon, nitrogen and sulfur are themselves regulated by … U.S. Department of Energy under contract no. DE-AC02-05CH11231. This work was also supported the grant #2016/23218-0 from São Paulo Research Foundation (FAPESP). A.P.C. …
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Partners
… Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National …
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