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A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN.
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Effects of Polar Light Cycle on Microbial Food Web
… lake microbial communities change with the seasons. The Science Light-harvesting bacteria (phototrophs) in … long ago, this shift to archaea being the main producer doesn’t occur here. Understanding this fundamental … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature … suite of tools managed by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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The survivor strain: isolation and characterization of Phormidium yuhuli AB48, a filamentous phototactic cyanobacterium with biotechnological potential
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … in proposal calls to the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Fungal & Algal Program User Advisory Committee
… & Algal Program Advisory Committee is chartered by the Science Program Heads and report back to them. The Committee … and scientific relevance and quality. The Committee does not perform management functions nor does it direct the Programs’ management teams on how to …
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JGIota: Looking Back at Sequencing for Soybeans
… could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the … been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear more about …
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A Natural Mechanism Can Turbocharge Viral Evolution
… allows microbes to adapt to changing environments. The Science The first step in the deadly dance between a virus … a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at … Office of the President. This work was part of the DOE Joint BioEnergy Institute ( http://www.jbei.org ) …
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Genome Sequence of the Chestnut Blight Fungus Cryphonectria parasitica EP155: A Fundamental Resource for an Archetypical Invasive Plant Pathogen.
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid … as input. Data analysis Q:  What types of analysis support does JGI provide for DNA modification detection? A:  DNA … Illumina data. It’s not strictly necessary, as you can get finished quality microbial data polishing with just the …
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Duplications and losses of genes encoding known elements of the stress defence system of the Aspergilli contribute to the evolution of these filamentous fungi but do not directly influence their environmental stress tolerance
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