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Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus
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Trent Northen
… Dr. Northen is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in … application of advanced mass spectrometry approaches and model laboratory ecosystems (EcoFABs). … Trent Northen is the Metabolomics Science Program Head at the JGI. Click to learn …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the genomes of two varieties of a close relative and model species. The following year saw the beginnings of … about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Accepted proposals emphasize JGI interests in algae and … and algae’s roles in nutrient cycling, now a facet of the  Fungal & Algal Program . For example, green algae represent … . John McKay of Colorado State University is interested in developing mutant populations of the bioenergy feedstock …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … for studying photosynthesis and cell motility. It’s also a model for studying lipid production in other algae that may … of all kinds,” noted Igor Grigoriev, head of the JGI’s Fungal & Algal Program, including work with Olivier Vallon …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome … help crop breeders and researchers predict how crops and model organisms may evolve.  Determining the genetic codes … after his time at the JGI) as a helpful influence for both developing the method and publishing the paper. “I would say …
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Training the Next Generation of Talent
… New Graduate Internship Program Builds Bridges Between DOE JGI, UC … graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural Sciences (SNS). During his … Lawrence worked with Nicole Johnson in Wang’s group on developing an algorithm for RNA-Seq assembly. RNA-Seq is a …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome … for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship … on how the JGI-UC Merced Intern partnership had become a “model” of sorts at the Lab. “This project represents part of … position with the Plant and Microbe Interaction group at Oak Ridge National Laboratory, he has started a new …
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Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology and microfluidics at the … spanning bacteria, fungi, and plants. His team is also developing single-nuclei sequencing methods to characterize … BS in Biochemistry and Cell Biology, University of California, San Diego PhD in …
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