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Mateus Fiamenghi
… and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …
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Mapping Heat Resistance in Yeasts
… DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence Berkeley National Laboratory, aim … and improve functional annotation to harness the genomic data. Reported October 8, 2018, in Nature Genetics , a team … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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10 From JGI on the 2019 Highly Cited Researchers List
… Lead Dan Rokhsar , Molecular Biology & Genetics Staff Data Scientist Asaf Salamov, Plant & Animal Science category … categories Microbial Systems research group lead and User Programs Deputy Susannah Tringe, Cross-Field category … part of a JGI team that led a community effort to develop guidelines and best practices for defining virus data …
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JGI Launches Latest Strategic Plan
… quadrillion nucleotide bases of DNA sequence to the public data repositories over its now 20-plus-year history. In … include JGI’s emerging leadership role in a Microbiome Data Science effort (pages 37-39) and the launching of a … our Berkeley Lab colleagues, particularly with the other user facilities including the Advanced Light Source, the …
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When “The Blob” Made It Hotter Under the Water
… Data from marine heatwave event may foreshadow climate … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in marine microbial communities. Using the JGI-generated data, Sachia Traving, a former postdoctoral fellow in the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … accepted through JGI’s calls. Nearly 200 Terabases of data are expected to be generated for the accepted … or by allowing the generation of preliminary data for a larger study.” …
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Streamlining Regulon Identification in Bacteria
… coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the … environments are expressed when their functions are needed. Data yielded through RIViT-seq expand the known … S. coelicolor . With results from the research, RIViT-seq data have increased the identification of the number of …
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Using BLAST to Teach “E-value-tionary” Concepts
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… to make sure the goals, experimental design, and plan for data utilization are clear. Contact JGI staff for feedback … a proposal. Describe in detail what you will do with the data! Ideally, you or someone on your team will have … exploring how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform …
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JGI-UC Merced Interns Share Their 2021 Experiences
… Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Making Big Data Metagenomic Clustering Scalable …
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Atif Shahab
… platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project … Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned … solutions for large-scale sequencing projects and data analysis pipelines.  …
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