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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular Sciences Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources … just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Genome‐wide association studies and expression‐based quantitative trait loci analyses reveal roles of HCT2 in caffeoylquinic acid biosynthesis and its regulation by defense‐responsive transcription factors in Populus
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … cycling takes place only on a microbial level. Previous studies focused on the Southern Ocean have found that in …
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Tomas Tyml
… Tomas uses traditional cultivation methods along with microscopy and genomics to study … microbial eukaryotes. He hopes to broaden our understanding of the roles these associations play in the evolutionary history of life. …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could … bacteria to produce ethylene and more.  Microbes excel at recycling the abundant miscellanea of their surroundings. … electronic insights illuminates more ingredients With knowledge of the genes and enzymatic activity of the MAR system, …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … All three  Brachypodium  grasses have small genomes, short life cycles and can be easily transformed, traits that make … line is simply not true based on previous pan-genome studies. Thus, we must compare multiple polyploid genomes to …
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The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown‐rot mechanism involving Fenton chemistry
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Genome annotations of two C. citriodora subspecies broaden understanding … synthesis and broad diversity of terpenes. Until recently, studies of the TPS gene family were confined to two … Sequencing and assembly data carried out by EMBRAPA as part of the  Corymbia  genome project was supported by FAPDF …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … bacterial strains as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… As part of the JGI’s 25th anniversary celebration, the 2022 Annual Meeting featured speakers who shared … sequencing for the Human Genome Project out to the future of the institution. Their talks shed light on how the JGI …
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JGI User Executive Committee Expands
… have been elected to the User Executive Committee (UEC) of the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley … he’s interested in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  More … recently, these long-reads have been applied to DNA methylation analysis as well as improving metagenome assemblies. … deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) …
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