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New and Improved: Eucalyptus Reference is Now Accessible
… assembly to support targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to the 2014 Eucalyptus grandis reference genome …
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How Filamentous Fungi Sense Food
… of California, Berkeley used a multi-omics approach to reconstruct and model gene regulatory pathways used by the … fungus  Neurospora crassa, and to identify and decide on the order in which this fungus breaks down plant cell … them to efficiently break down the wide array of simple and complex components present in plant biomass. This is of …
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Plant Pan-Genomics Comes of Age
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… Congratulations to US Department of Energy (DOE) Joint Genome … (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the … year in Berkeley, Calif. Convening the “viral ecogenomics” community, the VEGA symposium provides networking …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program (CSP) Applications Webinar inviting researchers to submit white papers to … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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Yeasts and how they came to be
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Awakening the Sleeping Carboxylase Function of Enzymes: Engineering the Natural CO2‑Binding Potential of Reductases
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first ever measurements of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant … functional activities of specific microbial groups within complex communities.  The Microscale Applications group also …
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Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a commonly-used process for studying microbial communities, with results published in … Work at Lawrence Livermore National Laboratory was conducted under the auspices of the U.S. …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … data were generated, bioinformatic tools for binning metagenome data involved with mainly eukaryotic origins were … the much more extensive taxonomic and genetic sampling, our study confirmed the affinity between Olpidium and the …
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Engagement Webinar: How to Apply for Resources at Multiple DOE User Facilities
… On February 17, 2021, JGI and the Environmental Molecular … all around the world. We work with start-ups and mature companies, as long as the data are not proprietary. In … reach out to any of them with questions. Q:  Apart from instrumental support, how much help can users expect for data …
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