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… to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. … to identify both viruses and plasmids; one is marker gene-based, and the second is a neural network approach. The tool …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … a more straightforward way to connect genes and infer changes in gene function across the phylogeny — and link …

For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … Asterochloris glomerata . To see how gene expression changes when living together versus apart, the team grew the … including those involved in carbon and nitrogen exchange between the lichen partners. This genomic and …

In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … Our method clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of …

… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … Academy of Sciences first needed to build a detailed database on the denizens in the soil. While large protein … other hand, appear to be ignoring these difficult potential foodstuffs. The team’s findings also illustrate what’s …

A collaborative team led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis … are available on JGI’s fungal portal  MycoCosm . Based on these analyses, we conducted further field … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …

Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … University of British Columbia and Dr. Rochon from Agri-Food Canada at Summerland BC aimed to generate whole genome … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s …

Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and the Desert Research Institute, the … 2025 NeLLi Symposium delves into the most recent expansions of the Tree of Life and latest discoveries toward the evolution of …