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… Educational training technologies provide opportunities for students and professors alike The Science In  PLoS … and skill development while curating reusable microbiome data. Undergraduate educators are partnering with the JGI … in parallel. While KBase does not currently have all the tools for complete processing and analysis of fungal data, …

… research focuses on leveraging thousands of metagenomic datasets from host-associated and environmental samples to identify and characterize genomic information from uncultivated microbes and viruses. Prior to joining the JGI, she was a Bioinformatics … BS, Biochemistry and Cell Biology, University of California, San Diego ( magna cum laude ) PhD, Marine Biology, …

… For many scientists, the culmination of their work into a … ecosystem,” said Salamov, one of Wint’s mentors and a data scientist at the JGI. Previous studies were conducted … predictor of gene expression levels using machine learning tools. “This was very exciting to see how Rhondene not only …

… months, the students participated in networking workshops, data carpentry hackathons, and also made new friends while … experiences and what they’ll take with them as they go forward in their careers.   Listed below are the interns, … ” Anna Kucherova : “I got to learn about skills and tools that I’d never done before from my mentors. Also, …

… samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … or gene networks conserved throughout evolution.  The tool has also shed light on the widespread gain and loss of …

… , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to counter … address some of the most pressing challenges of our time. For more information, please visit  …

… The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … genome for M. sinensis, and the associated genomic tools, allows Miscanthus to both inform and benefit from … by the Energy Biosciences Institute and the DOE Center for Advanced Bioenergy and Bioproducts Innovation, which is …

… to advance foundational science, creating opportunities for the global research community. The U.S. Department of … a vast range of organisms and ecosystems. These kinds of data could open opportunities along multiple avenues, … expect to offer our user community an exciting range of new tools and capabilities to support their scientific …

… the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … and Liability Act (CERCLA) was enacted by Congress in 1980 for Superfund sites which are hazardous waste areas that … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI …

… For the first time in several years, the DOE Joint Genome … and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein … and Frederik Schulz, Structure Prediction to Annotate Novel Viruses: the Case of Polintoviruses Josue Duque and mentor …

… the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … that can’t be cultured by analyzing and then extrapolating data obtained from environmental samples — to identify over … the Hess Lab at UC Davis. “It was a really huge effort in tool development and … that was really the foundation for …