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Assembly and seasonality of core phyllosphere microbiota on perennial biofuel crops
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and … Roux is also one of the lead organizers of the Viral EcoGenomics & Applications (VEGA) Symposium , which will take … later this year in Berkeley, Calif. Convening the “viral ecogenomics” community, the VEGA symposium provides networking …
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The Big Deal About Short Plants
Despite their diminutive stature, “short plants” such as mosses could be uniquely powerful in helping scientists link plant genetic sequences to what they do. But …
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Metapangenomics reveals depth-dependent shifts in metabolic potential for the ubiquitous marine bacterial SAR324 lineage
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JGI-KBase Panel at SACNAS
… contribution they make, whether as part of a course or internship, and before ever publishing a research article. … National Labs, User Facilities and Programs, and introduce best practices for anyone to get credit for their … ID (ORCID). Lastly, students will learn how they can start using these resources to track their contributions to …
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JGI@25: Solving the Mystery of the Missing Oil
Berkeley Lab. Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in … collaborations, Lab researchers working with the JGI successfully simulated how successive waves of microbial populations degraded the …
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Light-responsive expression atlas reveals the effects of light quality and intensity in Kalanchoë fedtschenkoi, a plant with crassulacean acid metabolism
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Restoring wetlands on intensive agricultural lands modifies nitrogen cycling microbial communities and reduces N2O production potential
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Draft Genome Sequence of Frankia sp. Strain DC12, an Atypical, Noninfective, Ineffective Isolate from Datisca cannabina
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Synthesis
… chromosomes for bioenergy, nutrient cycling and bioproduct applications.  The team has three subgroups: Synthetic … — including strain engineering — to make them more user accessible Synthetic Biology Informatics Group : a team that … DNA design, assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to …
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Computationally Classifying Fungal Lifestyles
… major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  … genome for each of the fungal families. Researchers had access to over 100  Dothideomycetes genomes, just enough of … test, the team reported that the algorithm was over 95% successful at classifying the fungal genomes Support Vector …
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Evolution of a Fungal Gene Expression Regulator
… or G in a genome sequence can lead to changes in protein structures and functions, but the DNA bases themselves can also … to another location in the genome. Many plant pathogens such as the fungi that cause poplar leaf rust, are rich in … technologies for producing both reference genomes and epigenomics, researchers are unwrapping complex mechanisms of …
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