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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … is central to our ability to offer host-engineering for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI … as part of the Community Science Program (CSP)  Functional Genomics proposal call. …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… “This exercise helped us in filling or updating geographic information for nearly 1,100 samples,” said Reddy. Kaushal also reviewed and assigned … name and IDs for nearly 20,000 public/private mtagenome biosamples in GOLD. “Besides these, he curated several small …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your science. …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … could be assigned to viral lineages, and predominantly in samples from marine (55%) and freshwater (40%) environments. … some of the most pressing challenges of our time. For more information, please visit  energy.gov/science/office-science …
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2023 Progress Report
Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, large-scale data, and professional …
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Jeremy Schmutz
Nucleic Acids Res . 51, 1–24.Lovell, JT et al. 2021. Genomic mechanisms of climate adaptation in polyploid … Nature Biotechnology 38:1203-1210. Chen, ZJ et al. 2020. Genomic diversifications of five Gossypium allopolyploid … Nature Genetics 52: 525-533. Lovell, JT et al. 2018. The genomic landscape of molecular responses to natural drought …
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W. Berkeley Kauffman
Berkeley is responsible for receiving and processing user samples. His R&D work focuses on the development of new … to improve the JGI’s capabilities in the areas of metagenomics, single-particle genomics, and metabolic …
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Doubling Down on Known Protein Families
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … of these communities via whole genome sequencing of the samples, without being able to distinguish which gene … genes were typically discarded from any analysis as useless information. These represent the ‘unknown unknowns’ because …
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How Maize Makes An Antibiotic Cocktail
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  Community Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  synthesis and …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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David Goodstein
Genome Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts … group also develops and maintains the Phytozome Plant Genomics web portal. … BS in Physics, New York University, … genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of Plant Biology 72, …
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Ancient Algae Reveal Secrets of Plant Evolution
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the …
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