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… list available at Google Scholar. Dutkiewicz, Z. et al (2025) “ Proposal of Patescibacterium danicum gen. nov., sp. … to low-temperature marine ecosystems .”  The ISME Journal , Volume 18 Issue 1. Pitot, T.M., et al (2024) “ … tool for identifying, extracting, and assembling rRNA genes from environmental sequence data …

… The U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the culmination of nearly a decade of … near-complete genomes of P. hallii var. hallii (99.2% complete) and P. hallii var. filipes (94.8% complete) and …

… Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … JGI staff who mentored students this past year, through programs including the JGI-UC Merced Genomics Internship … hosted two JGI Engagement Webinars promoting the JGI fungal data portal MycoCosm and the algal portal PhycoCosm. …

… computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as … For example, with support from the  Exascale Computing Project , the JGI — along with the National Energy Research … at the JGI and Berkeley Lab were developing specific programs to handle this scale of data. Part 2: Souped Up …

… mimicking an array of microbial life. By leveraging massive user-generated datasets at the JGI and other publicly … Berkeley National Laboratory (Berkeley Lab), led the project. He explained that large language models—artificial … conducted by JGI users. These datasets include an extensive 25-year study of microbial communities in freshwater …

… Dr. Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the Microbial Program. In an LDRD-funded …

… 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement … DOE relevant cellulosic feedstocks. He provides scientific project management for the reference eukaryotic genomes … plant Setaria. Nature Biotechnology 30: 555-561. The International Brachypodium Initiative. Genome sequencing and …

… an array of experiments at universities and national user facilities, researchers found that this protein detects … — but the experts we were able to work with on this project to ask questions about structure and function,” … protein parts of that machine — photosynthesizers’ DNA and RNA. These sequences provide a list of machine parts, and an …

… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help … DNA Sequencing , Biodesign and Metabolomics .  Many users rely on a multifaceted combination of genomic, …

… through the Department of Energy-funded National Labs, User Facilities and Programs, and introduce best practices for anyone to get … program managers, and intern alumni will introduce projects designed for students to gain research experience …

… least a microgram of DNA in the tube so you’d need at least 2 micrograms in the sample to start with. 2. Q: What would a typical turnaround time be for data once samples are in hand at JGI? … to library sequencing and assembly. Like others, our turnaround time has been impacted by the pandemic. 3. Q: What …

… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … do so, they compared samples collected from an aquifer in 2012 and 2018 against a biofilm sample collected in 2018. They … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. …