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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… By leveraging new tools and large-scale data mining, JGI researchers nearly tripled the available fungal … and data  are publicly available through MycoCosm , the JGI’s web portal for fungal genome data.   The Impact This … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Berkeley Lab, addressed this gap in a …
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Digging into Microbial Ecosystems Deep Underground
… these systems.” -Mike Wilkins, Colorado State University GI users and microbiome researchers Mike Wilkins and his … deep underground, and before the pandemic, they took the JGI on a sampling field trip. One of the questions they’re … initiative called Facilities Integrating Collaborations for User Science (FICUS) . Through FICUS, the researchers have …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … mapping these RNA reads. “Currently, this is the largest JGI-sequenced fungal metatranscriptome yet,” said Igor … of Energy Joint Genome Institute, a DOE Office of Science User Facility located at Lawrence Berkeley National …
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PMR5, an acetylation protein at the intersection of pectin biosynthesis and defense against fungal pathogens
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science of the … ( https://ror.org/05v3mvq14 ), a DOE Office of Science User Facility under Contract No. DE-AC02-05CH11231. …
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High Throughput Phosphoglycolate Phosphatase Activity Assay Using Crude Leaf Extract and Recombinant Enzyme to Determine Kinetic Parameters Km and Vmax Using a Microplate Reader
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Boosting Small Molecule Production in Super “Soup”
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … systems for metabolic pathways that we plan to offer to users in the near term,” added JGI Director Nigel Mouncey . …
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A One-Stop Shop for Analyzing Algal Genomes
… genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and biochemically characterized at UC … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. The sequences were then … Scientific Computing Center , a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory. …
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Georg Rath
… has been leading the Systems Infrastructure Team at the JGI since 2020. Before joining the JGI, he has been working on the boundary of life science and … from JGI’s science and production sequencing programs. …
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2025 Progress Report
… JGI researchers demonstrate how their laboratory and data science efforts support users, advance foundational science and enable biotechnology … Mission  As a U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental …
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Understanding Wildfire Recovery, Starting in Soil
… soils had in common.  To complete this analysis, a multi-institutional team of researchers collected soil samples … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National …
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