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Jeremy Schmutz
… with the JGI dates back to 1997, when he was working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed the … eukaryotic genomes produced by the DOE Joint Genome Institute and the collaborative projects funded through the …
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Doubling Down on Known Protein Families
… at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility … unique makeup of microbe players and the functions they perform, artificially replicating a whole community is … Indiana University. University of Crete (Greece). Georgia Institute of Technology, Michigan State University, Lawrence …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … arise when different ancestral species crossbreed before genome doubling. In allopolyploids, the set of …
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JGI@25: Building a Better Bean
… in soil health through nitrogen-fixation and holds clues for maximizing soybean, the common bean’s close relative, as a … led by Jeremy Schmutz of the JGI and the HudsonAlpha Institute for Biotechnology; Phil McClean of North Dakota …
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Better Genome Editing for Bioenergy
… tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide RNA to lead it … , a team of researchers likewise honed their tool before felling their research problem: at a genetic level, how … researchers at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. …
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An Automated Tool for Assessing Virus Data Quality
… virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and best practices for characterizing uncultivated viruses. Following up on … team from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… primary component of peatlands, processes  carbon can help maximize peatlands’ potential as carbon sinks and minimize … by minimizing flood risks and filtering water. Peat formed there over thousands of years sequesters more carbon … Researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence …
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A Plant Root Atlas for Tracking Developmental Trajectories
… nearly 100,000 single root cells and combining the information with previously published datasets. The work was  … at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility … of single-cell datasets in plants and provides a foundation for still larger efforts in diverse plant species beyond …
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Eelgrass Proves to Be Much Younger Than We Thought
… most abundant plants in the ocean, originated in Japan before spreading around the globe. Now, scientists have shed … Nature Plants , was able to assess absolute time estimates for major colonization events. It was previously assumed, … events. The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… a chemical and biological engineer at the University of California Santa Barbara. So plants don’t break down without a … goats, sheep and cows share an important talent. In their herbivorous lives, they all process loads of tough plants. … opened her talk at the  2022 JGI Annual Meeting . In an herbivore’s poop sample, there’s a whole heap of microbes, …
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An Integrated Dataset to Understand Ecosystem Interaction
… Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between poplar … molecular features to large ecosystem-level processes for the first time. By collecting data from 27 different … by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility …
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Corymbia Genome Expands Terpene Synthesis Knowledge
… Australia but is increasingly farmed in other countries for essential oil production. The recent assembly of two … by a team that included researchers at the DOE Joint Genome Institute, a DOE Office of Science User Facility, revealed … nature. As part of a proposal by the DOE’s Joint BioEnergy Institute (JBEI), the JGI worked on resequencing several …
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