Results

Georg Rath
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… (already known as CRISPR) that came up in her team’s metagenomic  samples . While Banfield continued exploring the interactions between the  bacteria and viruses in their samples, Doudna and her team … the largest component of a genome sequence, accounting for 45% of the human genome and 50-80% of certain plant genomes …
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Detection of short-term cropping system-induced changes to soil bacterial communities differs among four molecular characterization methods
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Improved Draft Genome Sequence of Microbacterium sp. Strain LKL04, a Bacterial Endophyte Associated with Switchgrass Plants
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Ice cover extent drives phytoplankton and bacterial community structure in a large north‐temperate lake: implications for a warming climate
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Coral mucus rapidly induces chemokinesis and genome-wide transcriptional shifts toward early pathogenesis in a bacterial coral pathogen
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Proposal of Patescibacterium danicum gen. Nov., sp. nov. in the ubiquitous ultrasmall bacterial phylum Patescibacteriota phyl. Nov
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Codon bias, nucleotide selection, and genome size predict in situ bacterial growth rate and transcription in rewetted soil
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Amplicon sequencing of ice and water phytoplankton and bacterial communities during an extreme winter in a central Canadian great lake
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Nikos Kyrpides
… Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program and the development of … comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI team, including Kyrpides, Camargo, and … CheckV , which assesses the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , … prediction for metagenome-derived viruses of archaea and bacteria ( PLoS Biol , 2023). These tools have significantly …
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Mining Metagenomes for Cas Proteins
… Cas14 proteins discovered from JGI’s IMG/M database and … Summary The CRISPR-Cas system is an immune mechanism in bacteria that confers resistance to foreign genetic elements … by searching for Cas12d homologs across IMG/M’s assembled metagenomic data. It turned out that some of these were …
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