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Accelerating Metagenomics Discoveries with Deep Learning
… data, or DNA sequencing data gathered from whole samples rather than single cells or isolated strains, is easy to generate, but …
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Ben Bowen
… & Metabolic Biology … 2024 Berkeley Lab Recognition of Excellence Award 2016 R&D 100 Winner 2014 Berkeley Lab … Arrayed Analysis Toolkit: analyzing spatially defined samples using mass spectrometry imaging. Analytical … (2015). Exometabolite niche partitioning among sympatric soil bacteria. Nature communications, 6(1), 8289. Yao, Y., …
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Partnerships: Myco-Ed
Institute where high molecular weight DNA is extracted from samples, which is then sent to the JGI for genome …
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JGI Accepts 17 Proposals for Community Science Program
… interact with their environment, potentially accelerating soil carbon loss. Orange ribbons mark the heated plots and … tree species that are widely grown as feedstocks for lignocellulosic and other biorefinery products. The work builds … interactions on the Amazon forest floor. Alicia Purcell of Northern Arizona University is studying microbial …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… into genes critical for roles including plant growth and cell wall development.  M. polymorpha is also among one of … Pangenomes encompass a plant’s genetic diversity beyond a single reference genome, which is key to understanding its …
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Ancient Algae Reveal Secrets of Plant Evolution
… land. Key gene groups involved in stress tolerance and multicellularity enabled plants to develop complex structures and … share key genes with land plants for making and modifying cell walls, a feature crucial for surviving on land. They … on land, these algae had a genetic toolkit for multicellular growth with plant-like cell walls and environmental …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental … data analysis to better characterize how viruses infect soil microbes and influence how soil ecosystems function. He was one of the eight JGI …
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iPHoP: A Matchmaker for Phages and their Hosts
… many more likely hosts for viruses in human microbiome samples, reflecting factors such as the quality and number … microbiome data. In other environments, such as terrestrial soil, having additional isolates and metagenomic datasets …
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Crysten Blaby-Haas
… at Berkeley lab. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working … discovery, design, and engineering. … PhD, Microbiology and Cell Science, University of Florida NIH Postdoctoral … Honoree, 2022 Peter-Boyer Postdoctoral Award for Research Excellence, 2015 34th Annual Women’s Recognition Award for …
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High-quality draft genome sequence of Flavobacterium suncheonense GH29-5T (DSM 17707T) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5T
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Draft genome sequences of Arthrobacter sp. AZCC_0090 and Mycobacterium sp. AZCC_0083 isolated from oligotrophic subsurface forest soil in the Santa Catalina mountains of Southern Arizona
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