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Corymbia Genome Expands Terpene Synthesis Knowledge
… synthesis and broad diversity of terpenes. Until recently, studies of the TPS gene family were confined to two … Corymbia are more abundant in the drier parts of Australia with lower quality soils and even in the desert areas with poor rainfall. That said, Corymbia can also thrive in …
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Honey Bee Gut Microbiota Divvy Up Dinner
… two polysaccharides can yield sugar monomers, it’s only with the aid of specialized bacterial enzymes. Honey bees … bacterial clades shared between honey bee and bumblebee gut microbiomes. Researchers found that pollen’s pectin and … down hemicellulose. The authors think this might have to do with the differences in lifestyle: honey bees need ample …
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Natural Prodcast Episode 24: Jackie Winter and SMC
… Metabolism Collaboratory data portal I’ve been working on with my colleagues Drew Doering and Bryce Foster and too … notes at naturalprodcast.com — I went a little overboard with links on this, since I’m hoping this episode and the … made, how do you test the bioactivity, how do you tinker with the machinery. And so it really is a blend of a lot of …
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Doubling Down on Known Protein Families
… wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls within that single beam. When it comes to microbial … Harnessing the collective power of more than 26,000 microbiome datasets, all accessible through the publicly …
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Methane-fed microbial communities enriched from field-grown rice support diverse heterotrophic bacteria
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A Sorghum Pangenome Opens More Doors to Discovery
… harness the traits that let this biomass powerhouse thrive. Within its genome, Sorghum bicolor holds keys to drought and … JGI Plant Program. Lovell was a senior author on this work with Nadia Shakoor, a research scientist at Donald Danforth … is the result of an international collaboration, beginning with the work of the late Todd Mockler, a researcher at …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what … eating are microbes.   And so that led him to come to me with the question, well, how are the microbes being affected … could become more sustainable through applications of microbiome science; our water quality, our water resource …
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DOE JGI Interns Share Their Summer Experiences
… and math (STEM) fields. This summer, they worked with Zhong Wang’s and Tanja Woyke’s groups, respectively. … Internship (SULI) Program students. Sharon Cao worked with Zhong Wang while Karen Tolentino worked with … and, Lizhen Shi , a graduate student conducting independent studies in Zhong Wang’s group. …
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Introducing New Members of the JGI User Executive Committee
… to help develop the JGI’s community outreach efforts with diversity, equity and inclusion in mind. Microbiome ecologist Shade became Director of Research at … data. She is also interested in reaching and engaging with new international collaborators and other scientific …
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Promoting the Power of Viral Metagenomics
… piece was written by Call, a postdoctoral fellow in the JGI Microbiome Data Science Group led by Kyrpides. Since early …
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Marine Microbe Contains Multitudes
… species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 … many varied environments? Now, a recent study published in Microbiome has uncovered that SAR324 encompasses four … out. The work on single cells was done in collaboration with scientists Tanja Woyke and Rex Malmstrom at the U.S. …
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An Automated Tool for Assessing Virus Data Quality
… to recover the genomes of these viruses and associate them with their microbial hosts. However, assembling viral … scientist Stephen Nayfach, the study’s first author in the Microbiome Data Science group led by Nikos Kyrpides. To … on one or both sides by genes from the host organism. With the virus-host boundary clearly defined using …
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