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Nitrosococcus watsonii sp. nov., a new species of marine obligate ammonia‐oxidizing bacteria that is not omnipresent in the world's oceans: calls to validate the names ‘Nitrosococcus halophilus’ and ‘Nitrosomonas mobilis’
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… The JGI was honored to host some of the brightest minds in genetics as part of our  2022 Annual Meeting . The … known as CRISPR) that came up in her team’s metagenomic  samples . While Banfield continued exploring the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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The Power of One, Amplified
… A preview of how large-scale single cell genomics complements metagenomics studies. The … that were missed within paired metagenome assembled genomes (MAGs), and that dominant populations varied with … is single cell genomics, where cells from environmental samples are first separated, and their genomes then …
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … Underground Research Laboratory, Hokkaido, Japan. From samples of both environments, they used fluorescence  in …
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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to disease-resistance that could prove fruitful for saving Citrus from greening disease. You’ve probably never heard of trifoliate orange. Otherwise known as  Poncirus … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Natural soil microbiome variation affects spring foliar phenology with consequences for plant productivity and climate‐driven range shifts
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at … at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial Biology at University of … and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the …
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Katherine Louie
… Dr. Louie joined the JGI in 2014 to develop the metabolomics program, … efforts to expand the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass … profiles from diverse biological and environmental samples in support of user science.  Capabilities offered by …
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MIxS-HCR: a MIxS extension defining a minimal information standard for sequence data from environments pertaining to hydrocarbon resources
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… From August 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited … that may or may not have human origins, and so works with samples from areas where humans and wildlife interact. He … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Trent Northen
… is currently a Senior Staff Scientist at Berkeley Lab. Since joining Berkeley Lab in 2008, Dr. Northen has had … Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the …
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