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Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… Sequencing technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a close look at more ecosystems and … are at the core of many environmental processes, and their genetic makeup forms the basis of their behavior in the …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what … be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like … in all kinds of ecosystems. However, matching these viral genetic sequences to their hosts is crucial to understanding …
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JGI-KBase Panel at SACNAS
… Nov. 2: Getting Credit for Scientific Contributions of Any Size What is considered to be a scientific contribution? This …
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Webinar: PhycoCosm Tutorial
… Learn more about JGI’s  PhycoCosm data portal , an interactive … again how did you pick genomes to be on the genomes portal? For the taxa I work on, there are 7 genomes on NCBI but your … A: I think the best way is to contact us for multiomics visualization as we want to support you in getting these …
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Annual Meeting 2027
…   Save the Date: March 16–18, 2027 The next JGI Annual Meeting will be held in … this page as further details become available. Sign up for our newsletter to receive updates.    … Stefani Ferreira , JGI Administrative and Logistics Support  …
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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and … advancement holds the potential to expand opportunities for bioenergy and bioengineering applications. “We worked … where transcription factors (TFs) — the proteins that flip genetic switches — bind DNA were limited to a few model …
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Gene Expression: From On-Off Switch to Dial
… Fine-tuning metabolic gene expression helps identify variants in yeast genes. The Science Scientists have … approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the … This work was funded by the Air Force Office of Scientific Research …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies … Integrated Microbial Genomes and Microbiomes (IMG/M) platform — has been developed to help inform scientists and … are a way to measure the collection of the microbiome’s genetic makeup. Microbes have specific tetranucleotide …
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JGI Scientists Pen Genome Watch Articles
… Tanja Woyke and other JGI researchers made their debut writing for the Nature Reviews Microbiology column last year — and … their expertise in environmental genomics by writing for the column Genome Watch in  Nature Reviews Microbiology … The U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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High-quality PacBio draft genome sequences of 17 free-living Bradyrhizobium and four related Nitrobacteraceae strains isolated from arid soils in the Santa Catalina Mountains of Southern Arizona
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal … known to infect most major food crops and feedstocks for biomass and biofuel production. Learning about the … (Berkeley Lab), has generated a more accurate phylogenetic tree tracking the evolution of  Dothideomycetes …
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