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Biases in genome reconstruction from metagenomic data
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Omega: an Overlap-graph de novo Assembler for Metagenomics
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Assembling the Marine Metagenome, One Cell at a Time
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Annotation of metagenome short reads using proxygenes
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Metagenomic Sequencing of Two Salton Sea Microbiomes
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Visualizing metagenomic and metatranscriptomic data: A comprehensive review
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A metagenomic perspective on the microbial prokaryotic genome census
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Team Science Reveals Important Protein in Poplar
… Described as the “DOE Tree,” poplar is considered one of the  Flagship Plants for the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … responses to nutrient stressors involved collaborators at multiple DOE facilities such as the Center for Functional …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental … how KBase (www.kbase.us) can support biological data analysis. It is a free, open source analytics platform … the sequence cap? A(nswer): Proposals that are looking at multiple areas or multiple ways to answer questions are …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … fungi, bacteria and viruses survive. With this metagenomic analysis, it was possible to identify specific attributes — … microbes in burned soils had in common.  To complete this analysis, a multi-institutional team of researchers …
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Dan Rokhsar
… efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After successful completion of … have applied and refined in the sequencing and evolutionary analysis of over fifty plant and animal genomes. He … Publications … Selected Publications …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … returning their genomes to a diploid state while retaining multiple copies of some genes. This polyploidization process … event (0.14 Mya) with a maternal  B. stacei parent. The analysis also revealed that these two  B. hybridum types …
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