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… Machine learning methods were applied on sequenced fungal … genomes to classify gene families. The Science As a proof of concept, researchers developed an algorithm that … plant pathogens (blue) vs saprobes (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole …

… JGI is in the process of shifting its operations from Walnut Creek to the heart of the … and general waste that would actually go to the landfill. Sorting required multiple speedpaks – large boxes … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …

… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s lab at … group focuses on the roles of microbial communities in wetland carbon cycling and the interactions of plants with …

… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually belonging to the ascomycetes, one of the two main branches of …

… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, Biodesign and pathway … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … Q1  (median/75th percentile*) DNA Synthesis Constructs <5kb in size Single gene or multiple small genes assembled to …

… In honor of the JGI's 25th anniversary in 2022, we have revisited a … sequences have been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference … genome is cited in roughly 10% of all since-released publications on green algae. “The Chlamy genome launched …

… those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by the production of multiple highly-cited papers that rank in the top 1% by citations for field and year in the Web of … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …

… Laboratory (EMSL) co-hosted a JGI Engagement: Accessing Resources at Multiple DOE User Facilities with a Single Proposal webinar, inviting researchers to apply for … just one research proposal. Guest speaker Michelle O’Malley of UC Santa Barbara talked about how her approved FICUS …

… Over the course of eight weeks this past summer, 10 students from UC Merced … develop presentation skills as well as build their network in the field of genomics and scientific research. The topics … students worked on ranged far and wide — from implementing new data visualization tools, to using natural language …

… As set out in the JGI Five-Year Strategic Plan – “Beyond Basepairs, A Vision for Integrative and  Collaborative Genome Science” – through … to further develop a more diverse and inclusive pool of talent for career opportunities at JGI and Berkeley Lab. …

… A group led by JGI scientists have made strides in improving and applying a method that allows researchers … ( CRAGE ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the … inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once you have a landing pad in …