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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Team develops a computational pipeline to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … not appear to be evenly distributed around the world. One expanded group is of viruses associated with bacteria; until …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … experience at the JGI, the Genomics Internship Program expanded to include UC Merced undergraduate students through …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Merced Internship Program was brimming with excitement and determination as they came onsite. From data carpentry … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … Lavenstein Bendall and mentor Juan C. Villada, Ecology & Evolution of Self-Catalytic Introns across Earth’s …
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Cultivating Symbiotic Antarctic Microbes
… Nanohaloarchaeota cultures reveal they are symbionts and not free-living organisms. The Science Researchers employed multiple … The Impact The Antarctic lakes are a “treasure trove” of unknown microbes that play critical roles in … (project 4031). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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An analysis of codon bias in six red yeast species
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Complete Genome Sequences of Six Strains of the Genus Methylobacterium
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Identification of synthetic consortia from a set of plant‐beneficial bacteria
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T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
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Diel partitioning in microbial phosphorus acquisition in the Sargasso Sea
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Products
… The JGI has diverse capabilities in: DNA and RNA sequencing, Sample and library preparation, … Mass spectrometry based metabolomics Below is a table of standard product offerings, including a description of … assembled to less than 5kb in length, cloned into vector of choice Glycerol stock of sequence verified clone 102/NA …
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2024 Progress Report
… The Integrative Genomics Building (IGB) seen above is home to … (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of large and giant … to over 900,000 proteins, and virus diversity in this group expanded 10-fold from just 205 genomes, redefining the … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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