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Fungal and plant gene expression in the Tulasnella calospora–Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
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High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775T, a plant pathogen of French bean pods
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Transcriptional response of the white-rot fungus Dichomitus squalens to polysaccharides reveals a co-expression network of plant biomass conversion related genes
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The Exometabolome of Xylella fastidiosa in Contact with Paraburkholderia phytofirmans Supernatant Reveals Changes in Nicotinamide, Amino Acids, Biotin, and Plant Hormones
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Multilevel analysis between Physcomitrium patens and Mortierellaceae endophytes explores potential long‐standing interaction among land plants and fungi
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at … Nowadays, Session is an Assistant Professor at Binghamton University in New York. He and Rokhsar have  recently … Our method clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of …
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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… that showcase our collaborations and capabilities to enable great science that will help solve energy and … CheckV, assesses viral genomes, and grades their quality based on completeness. Along with expanding the viral … engineer microbial genes. Eventually, whether the goal is improving soil microbiomes for carbon capture or removing …
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Boosting Small Molecule Production in Super “Soup”
… environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to … efforts to further develop sustainable alternative approaches for manufacturing bioproducts and biofuels . This … authors. “But this has been done most commonly in bacterial-based systems, and so one of the things that I think is so …
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Triggering Morel Fruiting
… part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In … decomposition mechanisms of morel with multi-omic approaches, our results revealed a striking capability of … are available on JGI’s fungal portal  MycoCosm . Based on these analyses, we conducted further field …
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Eric Olo Ndela
Eric’s research is focusing on the development of new computational approaches to identify and characterize novel Mobile Genetic Elements. …
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2024 Progress Report
The Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to … facilities to define the structure and function of a unique cyanobacterial protein and understand its role in …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the …
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