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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s … play a critical role in the global carbon cycle, and are of significant interest for their potential contributions to … organisms in an environment, all at once — rather than cultivating a single microorganism within a lab setting.  …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … school scientists. The Florida Everglades evokes images of fanboats skimming over swamps, while alligators peer … able to tell the students that the paper was accepted for publication in a reputable scientific journal. It was …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … first closed and finished genome derived from an uncultured bacterial single cell – a symbiont of the green … more than 200 microbial genomes that were mapped to nearly 30 major previously uncharted branches of the tree of life. …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome … Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros genus has been identified as the most … bacteria with symbiotic relationships in plant roots of legume crops such as soybeans and peas. Their …
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Effects of Polar Light Cycle on Microbial Food Web
… Populations of Antarctic lake microbial communities change with the … with light availability. A long-running time-series study offers a first glimpse into a full season’s cycle of this … found that the green sulfur bacteria population spiked to 83%, only to dramatically fall to 1% in early spring and …
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Webinar: MycoCosm Tutorial
… JGI’s  MycoCosm data portal , an interactive collection of sequenced fungal genomes, omics data and comparative … the potential to create new EcoGroups – reach out to us. 3.  Q: Can you use NCBI taxonomy information to search your … While are still working on finalizing the tree and related publication the tree is still in development and not …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … feedstock with a complex genome with multiple copies of its chromosomes. Switchgrass has deep roots that allow it to access nutrients easily from a … The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of Science …
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Draft genome sequences of two bacterial type strains isolated from a methanogenic bioreactor: Ruminiclostridium sufflavum DSM 19573T and Anaerosphaera aminiphila DSM 21120T
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples … discovered and characterized a novel phylum-level lineage of archaea with at least two major subgroups dubbed … added. The Marsarchaeota furnish greater definition of the roots of the tree of life on Earth, and their broad …
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