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Doubling Down on Known Protein Families
… researchers confirm microbial diversity is wilder than ever. Imagine researchers exploring a dark room with a flashlight, only able to clearly identify what falls within … also tried to hone in on the function of the genes via 3D modeling, and comparing structures of the unknown to those …
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JGI Accepts 17 Proposals for Community Science Program
Monitoring Inter-Organism Interactions Within Ecosystems Latest portfolio of … on harnessing genomics to developing sustainable resources for biofuels and bioproducts. Andrew Nelson of the Boyce … are interested in the microbial communities that live on Alaska’s glacially dominated Copper River Delta. They’re …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… will bring together researchers across major ecosystems and disciplines who are developing and applying laboratory … we will explore cutting-edge advancements in constructing, modeling, and applying these engineered ecosystems across … offering an unparalleled platform for exchanging ideas, forming collaborations, and charting the future of …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the “chytrids”).  A … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times … of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta …
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JGI Early Career Researchers Featured in mSystems Special Issue
In one article, Micro-Scale Applications head Rex Malmstrom and Metagenome Program head Emiley Eloe-Fadrosh outline more … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was applied to a recent Nature Communications paper, …
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Four principles to establish a universal virus taxonomy
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
As SIP experiments shed more light on microbial communities than ever before — especially with the prospect of … high-quality datasets, enabling global insights from modeling, machine learning, and subsequent experiments.  … …
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2024 Progress Report
… (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the … processed 13,700 metabolomics samples With our users, 247 publications were published   … Our primary objective is to …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral … Virus-Driven Alterations of Microbial Metabolism in Model Soil Ecosystems,” uses a combination of experimental …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
More than 20 UC Merced students have contributed to the research of … Programs Deputy Axel Visel teamed with University of California (UC), Merced assistant professor Suzanne Sindi from the School of Natural …
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Extensive remodeling of a cyanobacterial photosynthetic apparatus in far-red light
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