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The More the Merrier: Making the Case for Plant Pan-genomes
… traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to … and  B. stacei , as well as multiple lower quality genome assemblies for all three grasses. With these datasets, … One Polyploid Species, Two Subgenomes Among the team’s findings is that the polyploid  B. hybridum formed more than …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, more … as carbon, nitrogen and sulfur are themselves regulated by viruses in their environments. Environmental DNA … Additionally, CheckV was able to identify just over 17,000 contiguous sequences (contigs) of proviruses flanked on one …
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Mindfully Moving JGI
… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years … 250 people and their equipment from 4 single-story buildings to a new 4-story building 20 miles away in another city …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA … Program , the JGI enables large-scale synthesis support, sequencing, integrative -omics, and data mining, empowering … more than 10 papers, including two Nature Plants publications, in five years, have come out of the …
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DAS Tool for Genome Reconstruction from Metagenomes
… the efficacy of this approach would be greatly increased by having the ability to reconstruct complete genomes of … of the Emerging Technologies Opportunity Program in 2013, a team of researchers has been working on improving … (DAS Tool). To validate DAS Tool, the team applied it to assemblies from both simulated and real microbial …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… and, more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long history of dynamic … (Berkeley Lab) took on the Open Green Genome Initiative in 2018 as part of its Community Science Program. The OGG has set out to generate high-quality genome assemblies and annotations for 35 species representing all …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Brassicales Genome Initiative. Brassicales is represented by more than 4,700 species, and the proposal focuses on … have adapted thrive in environments including hot springs and acid mining sites, traits that might have … State University is interested in developing mutant populations of the bioenergy feedstock crop  Camelina sativa …
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Improving the coverage of the cyanobacterial phylum using diversity-driven genome sequencing
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Annotated Genome Sequence of the High-Biomass-Producing Yellow-Green Alga Tribonema minus
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Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga
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Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing
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A mosaic monoploid reference sequence for the highly complex genome of sugarcane
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