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… at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … — gives forest managers more avenues to bring forests back to full function. Foresters can transplant trees and soils, targeting helpful bacteria, viruses and fungi. Overall, better understanding …

… , two of the JGI’s sequencing platforms were turned back on. A third sequencing platform was scheduled to resume …

… sequences so that their sequences read the same (or nearly) backward and forward, like the name “Hannah.” Palindromes … sequence similarity, they enable gene copies to fold back on each other and thus be used as templates to correct …

… the way we found was to focus on comparison of expression levels between fungal trophic guilds,” said Lucas Auer, a …

… the exogenous nutrient supply to the soil. In contrast, isotopic evidence showed that morel mycelium colonizing the …

… on these advances. Over the last two decades, Stable Isotope Probing (SIP) has opened vast windows into specific … RNA or DNA sequencing with tracings of stable, heavy isotopes, SIP allows researchers to go beyond understanding … and the JGI.  With input from this group, as well as feedback from researchers around the world, the team have now …

L. et al. 2022. Expanding the Genomic Encyclopedia of Actinobacteria with 824 Isolate Reference Genomes. Cell Genomics … activation of biosynthetic gene clusters in undomesticated bacteria. Nat Microbiol. 4: 2498-2510 Mouncey NJ et al. … Krajewski V et al. 2010. Metabolic engineering of Gluconobacter oxydans for improved growth rate and growth yield on …

… insights. The way that plants process nutrients has a rich back story — they rely on enzymes that have been evolving … our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of … the genomes of 15 species from each of six kingdoms: eubacteria, archaea, protist, plant, fungi and animal. This …

… mass spectrometry research products such as stable isotope probing (SIP) to assess metabolite turnover, DNA-SIP …

… together to develop recommendations for cultivating new Bacteria and Archaea revealed by a recent genome census . … This symposium series will provide an overview of the bacterial, archaeal and microeukaryote diversity cataloged … See full agenda at the bottom of this page. … Check back for information on venue and lodging.  … Once you have …

… global view of virus diversity,” though not at the higher-level classifications of virus groups (phyla.) The new … the world. One expanded group is of viruses associated with bacteria; until now, most of the known RNA viruses have been … associated with eukaryotes. Along with the expansion of bacteria-associated RNA viruses is the finding that “a few …

… of in situ growth rates and carbon consumption of SAR11 bacteria, the most abundant bacterial group in the ocean. … uncultured microbes.  His group also handles the Stable Isotope Probing (SIP) Metagenomics pipeline  that reveals in … A standardized quantitative analysis strategy for stable isotope probing metagenomics. mSystems 8:e01280-22. Volland et …