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JGI & KBase at PAG XXVII
… The Plant and Animal Genome XXVII Conference (PAG) takes place … collaborative science opportunities. Learn how to apply for a project with the JGI Community Science Program, and how you can use the KBase system to accelerate your plant genomics research. Click here to download a list of …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … Archaea, bacteria, and viruses all operate in concert to form the foundation of this deep Earth ecosystem. For example, when certain viruses attack, their archaeal …
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DOE Metrics
…     2,208     *Includes Illumina and PacBio sequencing platforms. **Operating Hours target is based on 98% of the total … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on … improving the interpretation of microbial, metagenomic, or plant genomes. [Download PDF] End-of-year Goal – Develop one …
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Pinning Down a Piece of Photosynthesis
… The products of photosynthesis are easy to point out. Plants, algae and cyanobacteria create the air we breathe and the fuel for food webs as they turn carbon dioxide and water into … initial target was a family of proteins that appeared in plants and algae and contained a similar region —  a domain …
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JGI@25: Studying Sorghum’s Survival Skills
… challenges. Sorghum stands out as a candidate feedstock for biofuels thanks to its drought and flood hardiness. Even … little water, full sunlight and hot temperatures, sorghum plants can photosynthesize and thrive — some varieties grow … climate has earned it a place on the JGI’s Flagship Plant Genome roster. Sorghum has an important feature in …
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A Step Toward Controlling Soybean Rust
… , Sebastien Duplessis of the French National Institute for Agricultural Research (INRA)  proposed sequencing a reference genome for  P. pachyrhizi to develop better strategies to counter … soybean rust disease. Soybean itself is a  JGI Flagship plant genome , and JGI  published its genome sequence in …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… the evolutionary past may hold key insights. The way that plants process nutrients has a rich back story — they rely on enzymes that have been evolving for billions of years. However, these enzymes are often … work was our focus on all the kingdoms, including animals, plants, bacteria, archaea and fungi. We thought this kind of …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… not good at that, you guys. I’m trying really hard just for you. And the JGI Comms team. But mostly you. Anyway…I’m … podcast. BETSY PARKINSON: Awesome. Thank you so much for having me. Really excited to be here. DAN: Happy to have … think this is an area that is a little bit unclear whether for Streptomyces and actinomycetes, whether they can cross …
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2024 Progress Report
… also co-located in the IGB. Vision  Lead genomic innovation for a sustainable bioeconomy. Mission  As a U.S. Department … to realize our new vision to, “ Lead genomic innovation for a sustainable bioeconomy ” — as articulated in our new … transcriptomics, and cell- and cell-free expression platforms.  …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Taking Stock of the Known and Unknown Microbial Space
… the microbial diversity we know about, and proposes a path forward to curate and cultivate what is still unknown.  “We … key roles in regulating global nutrient cycles. The information gained from understanding the interactions between … of the data are publicly available in the National Center for Biotechnology Information (NCBI) GenBank collection and …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of … genetic material of Olpidium. They inoculated cucumber roots with zoospores of Olpidium bornovanus and allowed the … genetic material with various origins, ranging from fungi, plants to bacteria. Back in 2011 when these genome and …
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