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Effects of Polar Light Cycle on Microbial Food Web
Populations of Antarctic lake microbial communities change with the seasons. The Science Light-harvesting bacteria … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Community Resource for Secondary Metabolite Researchers
… compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a set of … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Berkeley Laboratory, built off past experience in developing a secondary metabolites portal within the Integrated …
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How to Target a Microbial Needle within a Community Haystack
… cycles remains unexplored and uncultivated. Developing a more targeted genomic approach would allow … overcome this hurdle, a team led by Bernhard Fuchs and his postdoctoral researcher Anissa Grieb at the MPI for Marine … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… mix-and-match characteristics — creating many different ways of processing nitrogen. To boost crops more efficiently … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … for computational analysis of the AT enzyme family, the JGI provided DNA synthesis capabilities to enable functional …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Research Council of Canada (NSERC) Discovery Grant to PFD (2019-06265). This work was also sponsored by NSF grants …
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Busting the Unbreakable Lignin
New evidence shows anaerobic fungi can degrade the hardiest of … Research Center. O’Malley is also affiliated with JBEI. The JGI data portals and pipelines helped identify potential genes responsible for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the …
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Finding the Fermenters
Most organisms use oxygen to convert food into energy. However, in environments with little or no oxygen, life had … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of more than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict …
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Making a Lichen Together
… a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and his team at the JGI contributed to annotation of the genomes, available …
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Ancient Algae Reveal Secrets of Plant Evolution
… , scientists have enhanced our understanding of how early plants transitioned from water to land. Key gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … The algal genomes sequences are available on the JGI’s  PhycoCosm portal. … This work was funded by the US …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Supercharging SIP in the Fungal Hyphosphere
… stable isotope probing helps ID novel interactions between bacteria and fungi The Science Researchers have … a commonly-used process for studying microbial communities, with results published in the  November 2022 issue … HT-SIP is a capability available to request through  the JGI proposal calls . … Work at Lawrence Livermore National …
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A Grass Model to Help Improve Giant Miscanthus
… of the genome sequence also provides insights into how the multiple chromosomes of Miscanthus arose by ancient … and insights into the dynamics of gene expression as it grows back vigorously year after year (perenniality). The … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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